PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_097D9E8A8.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Dof
Protein Properties Length: 436aa    MW: 47089.6 Da    PI: 8.0765
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_097D9E8A8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.81.3e-3997156261
                 zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 
                            ++k+l+cprC s++tkfCyynny+++qPr+fCk+C+ryWt+GGa+rnvPvG+grrk+k+ 
  Traes_4BL_097D9E8A8.1  97 PDKILPCPRCSSMDTKFCYYNNYNINQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKSKSI 156
                            7899*****************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074786.0E-3293154IPR003851Zinc finger, Dof-type
PfamPF027013.1E-3299155IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.761101155IPR003851Zinc finger, Dof-type
PROSITE patternPS013610103139IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGQLRAAAGA GGDCLIKLFG KTIPVPDAGA GDDLQHRGST TAEPKVQEIA PQDSMGSPQQ  60
PEVVDVEDPS AAKNSAADQQ DEEQGDTANQ KEKLKKPDKI LPCPRCSSMD TKFCYYNNYN  120
INQPRHFCKN CQRYWTAGGA MRNVPVGAGR RKSKSISAAS HFLQRIRAAL PGDPLCTPVN  180
TNGTVLSFGS NASTLDVSEQ MKHIKELNSV TRTENTDAPS VGSSAEGWAK GEESSQMNSR  240
ERVAAERSAN CAQHPCMNGA AMWPFSCAPS PAYFASNVAI PFYPAAAAAY WGCMVPGAWN  300
TPWQPQPQPQ PQPQCQSSSL PSAASPVSTM SSCFQSRKHP RDGDEERDTK GNGKVWVPKT  360
IRIDDVDEVA RSSIWSLIGI KGDKVEKDDG KGCKLARVFD PKDEAKMSSH RGNNSLPFLK  420
GNPAALSRSV NFQERS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2529240.0AK252924.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf174o03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003558722.10.0PREDICTED: cyclic dof factor 1-like
TrEMBLW5E1630.0W5E163_WHEAT; Uncharacterized protein
STRINGMLOC_7224.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20993793
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47500.12e-60cycling DOF factor 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]